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  5. Sobic.003G203100.1

Sobic.003G203100.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0011593 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011593_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G203100.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G203100.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR032867 DYW_dom Pfam 925 1047
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 648 682
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 233 267
IPR002885 Pentatricopeptide_rpt TIGRFAM 127 155
IPR002885 Pentatricopeptide_rpt TIGRFAM 235 264
IPR002885 Pentatricopeptide_rpt TIGRFAM 621 644
IPR002885 Pentatricopeptide_rpt TIGRFAM 751 784
IPR002885 Pentatricopeptide_rpt TIGRFAM 786 818
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 125 155
IPR002885 Pentatricopeptide_rpt Pfam 313 339
IPR002885 Pentatricopeptide_rpt Pfam 446 474
IPR002885 Pentatricopeptide_rpt Pfam 621 645
IPR002885 Pentatricopeptide_rpt Pfam 519 542
IPR002885 Pentatricopeptide_rpt Pfam 418 441
IPR002885 Pentatricopeptide_rpt Pfam 822 847
IPR011990 TPR-like_helical_dom_sf Gene3D 69 180
IPR011990 TPR-like_helical_dom_sf Gene3D 394 498
IPR011990 TPR-like_helical_dom_sf Gene3D 499 597
IPR011990 TPR-like_helical_dom_sf Gene3D 598 710
IPR011990 TPR-like_helical_dom_sf Gene3D 288 393
IPR011990 TPR-like_helical_dom_sf Gene3D 181 287
IPR011990 TPR-like_helical_dom_sf Gene3D 765 944
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 545 580
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 718 748
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 444 478
IPR002885 Pentatricopeptide_rpt Pfam 749 796
IPR002885 Pentatricopeptide_rpt Pfam 648 695
IPR002885 Pentatricopeptide_rpt Pfam 125 174
IPR002885 Pentatricopeptide_rpt Pfam 233 282
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 308 342
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 749 783
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 784 818

No CAZYmes available for this sequence

No external refs found!