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  5. Sobic.003G218200.1

Sobic.003G218200.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0017192 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017192_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G218200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G218200.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 343 392
IPR011990 TPR-like_helical_dom_sf Gene3D 236 342
IPR011990 TPR-like_helical_dom_sf Gene3D 708 794
IPR011990 TPR-like_helical_dom_sf Gene3D 108 235
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 712 746
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 747 781
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 502 536
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR002885 Pentatricopeptide_rpt Pfam 367 391
IPR033443 PPR_long Pfam 121 280
IPR011990 TPR-like_helical_dom_sf Gene3D 393 459
IPR011990 TPR-like_helical_dom_sf Gene3D 530 596
IPR011990 TPR-like_helical_dom_sf Gene3D 460 529
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 572 606
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 677 711
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 328 362
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 293 327
IPR002885 Pentatricopeptide_rpt TIGRFAM 330 363
IPR002885 Pentatricopeptide_rpt TIGRFAM 259 285
IPR002885 Pentatricopeptide_rpt TIGRFAM 399 432
IPR002885 Pentatricopeptide_rpt TIGRFAM 610 643
IPR002885 Pentatricopeptide_rpt TIGRFAM 367 395
IPR002885 Pentatricopeptide_rpt TIGRFAM 469 501
IPR002885 Pentatricopeptide_rpt TIGRFAM 715 748
IPR002885 Pentatricopeptide_rpt TIGRFAM 749 782
IPR002885 Pentatricopeptide_rpt TIGRFAM 680 712
IPR002885 Pentatricopeptide_rpt TIGRFAM 190 223
IPR002885 Pentatricopeptide_rpt TIGRFAM 298 328
IPR002885 Pentatricopeptide_rpt TIGRFAM 504 537
IPR002885 Pentatricopeptide_rpt TIGRFAM 434 468
IPR002885 Pentatricopeptide_rpt TIGRFAM 540 573
IPR002885 Pentatricopeptide_rpt TIGRFAM 574 608
IPR002885 Pentatricopeptide_rpt TIGRFAM 225 256
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 537 571
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 677 776
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 467 501
IPR011990 TPR-like_helical_dom_sf Gene3D 597 707
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 397 431
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 287
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 432 466
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 607 641
IPR002885 Pentatricopeptide_rpt Pfam 746 788
IPR002885 Pentatricopeptide_rpt Pfam 606 653
IPR002885 Pentatricopeptide_rpt Pfam 677 725
IPR002885 Pentatricopeptide_rpt Pfam 466 514
IPR002885 Pentatricopeptide_rpt Pfam 536 585
IPR002885 Pentatricopeptide_rpt Pfam 396 444
IPR002885 Pentatricopeptide_rpt Pfam 293 339
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221

No CAZYmes available for this sequence

No external refs found!