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  5. Sobic.003G220500.1

Sobic.003G220500.1


Description : tetratricopetide-repeat thioredoxin-like 1


Gene families : OG_01_0004048 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004048_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G220500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G220500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_249
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_116


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 206 379
IPR019734 TPR_repeat ProSiteProfiles 203 236
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 444 554
IPR036249 Thioredoxin-like_sf SUPERFAMILY 579 662
IPR001440 TPR_1 Pfam 480 511
IPR013766 Thioredoxin_domain Pfam 585 661
IPR011990 TPR-like_helical_dom_sf Gene3D 203 563
IPR019734 TPR_repeat SMART 271 304
IPR019734 TPR_repeat SMART 237 270
IPR019734 TPR_repeat SMART 398 431
IPR019734 TPR_repeat SMART 444 477
IPR019734 TPR_repeat SMART 478 511
IPR019734 TPR_repeat SMART 512 545
IPR019734 TPR_repeat SMART 203 236
IPR044534 TTL1-4 PANTHER 2 678

No CAZYmes available for this sequence

No external refs found!