Sobic.003G232600.1

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0004882 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004882_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G232600.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G232600.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_32

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	121	523
IPR000743	Glyco_hydro_28	Pfam	162	483
IPR012334	Pectin_lyas_fold	Gene3D	116	515
IPR006626	PbH1	SMART	407	428
IPR006626	PbH1	SMART	222	287
IPR006626	PbH1	SMART	298	324
IPR006626	PbH1	SMART	325	346
IPR006626	PbH1	SMART	378	399
IPR006626	PbH1	SMART	348	368

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH28	325	533	5.2e-90	158	485

External Links

No external refs found!