Sobic.003G256100.1

Description : two-pore channel 1

Gene families : OG_01_0005585 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005585_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G256100.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G256100.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_252
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_186

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	ISM	GOs from InterProScan
MF	GO:0005244	voltage-gated monoatomic ion channel activity	None	Extended
MF	GO:0005245	voltage-gated calcium channel activity	ISM	GOs from InterProScan
MF	GO:0005261	monoatomic cation channel activity	None	Extended
MF	GO:0005262	calcium channel activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015085	calcium ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	ISM	GOs from InterProScan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022832	voltage-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022843	voltage-gated monoatomic cation channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	ISM	GOs from InterProScan
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901702	salt transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027359	Volt_channel_dom_sf	Gene3D	441	573
IPR011992	EF-hand-dom_pair	SUPERFAMILY	338	415
IPR005821	Ion_trans_dom	Pfam	450	696
IPR005821	Ion_trans_dom	Pfam	147	331
IPR002048	EF_hand_dom	ProSiteProfiles	342	377
IPR044581	TPC1_plant	PANTHER	37	750
IPR002048	EF_hand_dom	SMART	346	374
IPR002048	EF_hand_dom	SMART	387	415
IPR002048	EF_hand_dom	ProSiteProfiles	383	418
IPR002048	EF_hand_dom	CDD	347	411

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.003G256100.1

Expression Profile

Co-expression Networks

Functional Annotation