Sobic.003G258800.1

Description : NADH-dependent glutamate synthase 1

Gene families : OG_01_0001298 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001298_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G258800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G258800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_299
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_175

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005506	iron ion binding	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006536	glutamate metabolic process	None	Extended
BP	GO:0006537	glutamate biosynthetic process	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009064	glutamine family amino acid metabolic process	None	Extended
BP	GO:0009084	glutamine family amino acid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0010181	FMN binding	ISM	GOs from InterProScan
MF	GO:0015930	glutamate synthase activity	ISM	GOs from InterProScan
MF	GO:0016040	glutamate synthase (NADH) activity	ISM	GOs from InterProScan
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	ISM	GOs from InterProScan
MF	GO:0016639	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	ISM	GOs from InterProScan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0043648	dicarboxylic acid metabolic process	None	Extended
BP	GO:0043650	dicarboxylic acid biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
MF	GO:0045181	glutamate synthase activity, NAD(P)H as acceptor	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	ISM	GOs from InterProScan
MF	GO:0051536	iron-sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029055	Ntn_hydrolases_N	Gene3D	96	535
IPR036188	FAD/NAD-bd_sf	Gene3D	1906	2072
IPR002489	Glu_synth_asu_C	CDD	1355	1604
IPR036188	FAD/NAD-bd_sf	Gene3D	1802	1903
IPR017932	GATase_2_dom	ProSiteProfiles	96	500
IPR029055	Ntn_hydrolases_N	SUPERFAMILY	96	526
IPR023753	FAD/NAD-binding_dom	Pfam	1804	2128
IPR036485	Glu_synth_asu_C_sf	Gene3D	1351	1622
IPR036188	FAD/NAD-bd_sf	SUPERFAMILY	1800	2139
IPR009051	Helical_ferredxn	Gene3D	1636	1801
IPR012220	Glu_synth_euk	PIRSF	47	2163
IPR006005	Glut_synth_ssu1	TIGRFAM	1656	2139
IPR002489	Glu_synth_asu_C	Pfam	1378	1564
IPR017932	GATase_2_dom	Pfam	96	523
IPR002932	Glu_synthdom	Pfam	930	1295
IPR006982	Glu_synth_centr_N	Pfam	571	859
IPR013785	Aldolase_TIM	Gene3D	547	910
IPR002932	Glu_synthdom	CDD	928	1307
IPR036485	Glu_synth_asu_C_sf	SUPERFAMILY	1346	1612
IPR013785	Aldolase_TIM	Gene3D	911	1344
IPR028261	DPD_II	Pfam	1677	1790

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.003G258800.1

Expression Profile

Co-expression Networks

Functional Annotation