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Description : Regulator of chromosome condensation (RCC1) family protein
Gene families : OG_01_0006809 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006809_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G269400.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G269400.2 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_113 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_43 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0046872 | metal ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR009091 | RCC1/BLIP-II | Gene3D | 176 | 438 |
| IPR000306 | Znf_FYVE | Pfam | 601 | 667 |
| IPR017455 | Znf_FYVE-rel | ProSiteProfiles | 605 | 667 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 445 | 496 |
| IPR000408 | Reg_chr_condens | Pfam | 496 | 545 |
| IPR000408 | Reg_chr_condens | Pfam | 327 | 379 |
| IPR000408 | Reg_chr_condens | Pfam | 447 | 493 |
| IPR000408 | Reg_chr_condens | Pfam | 550 | 597 |
| IPR000408 | Reg_chr_condens | Pfam | 383 | 431 |
| IPR000408 | Reg_chr_condens | Pfam | 276 | 324 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 549 | 600 |
| IPR011011 | Znf_FYVE_PHD | SUPERFAMILY | 601 | 670 |
| IPR013083 | Znf_RING/FYVE/PHD | Gene3D | 601 | 681 |
| IPR009091 | RCC1/BLIP-II | SUPERFAMILY | 216 | 602 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 383 | 434 |
| IPR011993 | PH-like_dom_sf | Gene3D | 3 | 122 |
| IPR000408 | Reg_chr_condens | ProSitePatterns | 421 | 431 |
| IPR013591 | Brevis_radix_dom | ProSiteProfiles | 981 | 1036 |
| IPR027988 | BRX_N | Pfam | 848 | 883 |
| IPR013591 | Brevis_radix_dom | Pfam | 982 | 1035 |
| IPR000408 | Reg_chr_condens | ProSitePatterns | 369 | 379 |
| IPR000306 | Znf_FYVE | SMART | 599 | 668 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 497 | 548 |
| IPR000408 | Reg_chr_condens | PRINTS | 278 | 294 |
| IPR000408 | Reg_chr_condens | PRINTS | 328 | 344 |
| IPR000408 | Reg_chr_condens | PRINTS | 369 | 385 |
| IPR000408 | Reg_chr_condens | PRINTS | 544 | 565 |
| IPR000408 | Reg_chr_condens | PRINTS | 486 | 504 |
| IPR000408 | Reg_chr_condens | PRINTS | 385 | 399 |
| IPR009091 | RCC1/BLIP-II | Gene3D | 439 | 600 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 328 | 382 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 276 | 327 |
No CAZYmes available for this sequence
| No external refs found! |