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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0011828 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011828_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G277100.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G277100.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_161 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 442 | 655 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 339 | 441 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 240 | 338 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 370 | 404 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 274 | 400 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 506 | 540 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 471 | 505 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 473 | 507 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 508 | 539 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 212 | 236 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 372 | 406 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 244 | 268 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 273 | 306 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 472 | 517 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 271 | 318 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 369 | 417 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 213 | 236 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 445 | 470 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 244 | 269 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 549 | 570 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 97 | 239 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 239 | 269 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 270 | 304 |
No CAZYmes available for this sequence
| No external refs found! |