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  5. Sobic.003G293200.1

Sobic.003G293200.1


Description : nucleic acid binding;zinc ion binding;DNA binding


Gene families : OG_01_0002844 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002844_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G293200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G293200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_142
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_116


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003121 SWIB_MDM2_domain Pfam 755 826
IPR003169 GYF CDD 1219 1274
IPR003169 GYF SMART 1220 1275
IPR013083 Znf_RING/FYVE/PHD Gene3D 491 595
IPR000571 Znf_CCCH ProSiteProfiles 1732 1759
IPR003169 GYF Pfam 1222 1262
IPR001965 Znf_PHD SMART 503 549
IPR019835 SWIB_domain SMART 746 830
IPR004343 Plus-3_dom ProSiteProfiles 886 1019
IPR035445 GYF-like_dom_sf Gene3D 1221 1278
IPR011011 Znf_FYVE_PHD SUPERFAMILY 499 556
IPR004343 Plus-3_dom Pfam 892 994
IPR036885 SWIB_MDM2_dom_sf SUPERFAMILY 744 828
IPR036128 Plus3-like_sf SUPERFAMILY 887 1016
IPR035445 GYF-like_dom_sf SUPERFAMILY 1212 1272
IPR036885 SWIB_MDM2_dom_sf Gene3D 738 833
IPR003169 GYF ProSiteProfiles 1219 1273
IPR003121 SWIB_MDM2_domain ProSiteProfiles 745 828
IPR004343 Plus-3_dom SMART 886 996
IPR036128 Plus3-like_sf Gene3D 888 1016

No CAZYmes available for this sequence

No external refs found!