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  5. Sobic.003G301800.1

Sobic.003G301800.1


Description : phosphoenolpyruvate carboxylase 3


Gene families : OG_01_0000128 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000128_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G301800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G301800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_146


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
BP GO:0006099 tricarboxylic acid cycle ISM GOs from InterProScan
MF GO:0008964 phosphoenolpyruvate carboxylase activity ISM GOs from InterProScan
BP GO:0015977 carbon fixation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR021135 PEP_COase Pfam 36 966
IPR033129 PEPCASE_His_AS ProSitePatterns 592 604
IPR018129 PEP_COase_Lys_AS ProSitePatterns 168 179
IPR021135 PEP_COase PRINTS 220 236
IPR021135 PEP_COase PRINTS 280 295
IPR021135 PEP_COase PRINTS 167 180
IPR021135 PEP_COase PRINTS 632 661
IPR021135 PEP_COase PRINTS 441 461
IPR021135 PEP_COase PRINTS 590 610
IPR021135 PEP_COase PRINTS 764 790
IPR022805 PEP_COase_bac/pln-type Hamap 23 966
IPR021135 PEP_COase PANTHER 3 966
IPR015813 Pyrv/PenolPyrv_Kinase-like_dom SUPERFAMILY 33 966

No CAZYmes available for this sequence

No external refs found!