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  5. Sobic.003G310300.1

Sobic.003G310300.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0011153 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011153_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G310300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G310300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_220


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 133 251
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 693 727
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 307 341
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 215 249
IPR002885 Pentatricopeptide_rpt Pfam 541 601
IPR002885 Pentatricopeptide_rpt Pfam 306 355
IPR002885 Pentatricopeptide_rpt Pfam 485 531
IPR002885 Pentatricopeptide_rpt Pfam 696 740
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 658 692
IPR002885 Pentatricopeptide_rpt Pfam 212 241
IPR002885 Pentatricopeptide_rpt Pfam 443 476
IPR002885 Pentatricopeptide_rpt TIGRFAM 217 250
IPR002885 Pentatricopeptide_rpt TIGRFAM 274 308
IPR002885 Pentatricopeptide_rpt TIGRFAM 555 589
IPR002885 Pentatricopeptide_rpt TIGRFAM 625 649
IPR002885 Pentatricopeptide_rpt TIGRFAM 696 729
IPR002885 Pentatricopeptide_rpt TIGRFAM 520 554
IPR002885 Pentatricopeptide_rpt TIGRFAM 309 340
IPR002885 Pentatricopeptide_rpt TIGRFAM 182 212
IPR002885 Pentatricopeptide_rpt TIGRFAM 485 518
IPR002885 Pentatricopeptide_rpt TIGRFAM 344 373
IPR002885 Pentatricopeptide_rpt TIGRFAM 453 483
IPR002885 Pentatricopeptide_rpt TIGRFAM 590 623
IPR002885 Pentatricopeptide_rpt TIGRFAM 662 693
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 623 657
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 320 718
IPR002885 Pentatricopeptide_rpt Pfam 274 304
IPR002885 Pentatricopeptide_rpt Pfam 625 649
IPR002885 Pentatricopeptide_rpt Pfam 662 690
IPR002885 Pentatricopeptide_rpt Pfam 182 208
IPR011990 TPR-like_helical_dom_sf Gene3D 252 390
IPR011990 TPR-like_helical_dom_sf Gene3D 391 509
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 448 482
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 342 376
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 483 517
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 553 587
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 588 622
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 518 552
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 272 306
IPR011990 TPR-like_helical_dom_sf Gene3D 579 652
IPR011990 TPR-like_helical_dom_sf Gene3D 723 788
IPR011990 TPR-like_helical_dom_sf Gene3D 510 578
IPR011990 TPR-like_helical_dom_sf Gene3D 653 722

No CAZYmes available for this sequence

No external refs found!