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  5. Sobic.003G314900.1

Sobic.003G314900.1


Description : 5\'-3\' exonuclease family protein


Gene families : OG_01_0007130 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007130_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G314900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G314900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_257
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_202


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004518 nuclease activity ISM GOs from InterProScan
BP GO:0006281 DNA repair ISM GOs from InterProScan
MF GO:0035312 5'-3' DNA exonuclease activity ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006084 XPG/Rad2 PANTHER 1 687
IPR006085 XPG_DNA_repair_N Pfam 1 98
IPR006086 XPG-I_dom Pfam 141 226
IPR044752 PIN-like_EXO1 CDD 1 200
IPR008918 HhH2 SMART 213 246
IPR006085 XPG_DNA_repair_N SMART 1 99
IPR036279 5-3_exonuclease_C_sf SUPERFAMILY 211 334
IPR029060 PIN-like_dom_sf SUPERFAMILY 2 226
IPR037315 EXO1_H3TH CDD 214 285
IPR006084 XPG/Rad2 PRINTS 137 154
IPR006084 XPG/Rad2 PRINTS 158 178
IPR006084 XPG/Rad2 PRINTS 24 38
IPR006084 XPG/Rad2 PRINTS 73 92
IPR006084 XPG/Rad2 PRINTS 216 231
IPR006086 XPG-I_dom SMART 142 208

No CAZYmes available for this sequence

No external refs found!