Sobic.003G316500.1

Description : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

Gene families : OG_01_0003677 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003677_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G316500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G316500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_86
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_218

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001841	Znf_RING	ProSiteProfiles	965	1004
IPR038718	SNF2-like_sf	Gene3D	607	706
IPR038718	SNF2-like_sf	Gene3D	720	850
IPR038718	SNF2-like_sf	Gene3D	499	590
IPR001650	Helicase_C	Pfam	1103	1202
IPR014001	Helicase_ATP-bd	ProSiteProfiles	542	811
IPR027417	P-loop_NTPase	Gene3D	1088	1256
IPR017907	Znf_RING_CS	ProSitePatterns	980	989
IPR013083	Znf_RING/FYVE/PHD	Gene3D	956	1055
IPR014001	Helicase_ATP-bd	SMART	523	828
IPR001650	Helicase_C	ProSiteProfiles	1096	1255
IPR027417	P-loop_NTPase	SUPERFAMILY	858	1258
IPR001841	Znf_RING	SMART	965	1003
IPR027417	P-loop_NTPase	SUPERFAMILY	510	849
IPR001650	Helicase_C	SMART	1119	1202
IPR000330	SNF2_N	Pfam	538	927

No CAZYmes available for this sequence

External Links

No external refs found!