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  5. Sobic.003G322800.1

Sobic.003G322800.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0044423 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0044423_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G322800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G322800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_188
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_119


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012334 Pectin_lyas_fold Gene3D 24 366
IPR018082 AmbAllergen PRINTS 173 194
IPR018082 AmbAllergen PRINTS 275 294
IPR018082 AmbAllergen PRINTS 315 339
IPR018082 AmbAllergen PRINTS 47 64
IPR018082 AmbAllergen PRINTS 109 125
IPR018082 AmbAllergen PRINTS 344 367
IPR018082 AmbAllergen PRINTS 253 272
IPR045032 PEL PANTHER 6 370
IPR002022 Pec_lyase SMART 101 298
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 25 364
IPR002022 Pec_lyase Pfam 113 292

No CAZYmes available for this sequence

No external refs found!