Sobic.003G326500.1

Description : apurinic endonuclease-redox protein

Gene families : OG_01_0008827 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008827_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G326500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G326500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_174
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_74

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0004518	nuclease activity	ISM	GOs from InterProScan
MF	GO:0004519	endonuclease activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR020848	AP_endonuclease_F1_CS	ProSitePatterns	445	460
IPR004808	AP_endonuc_1	PANTHER	494	803
IPR004808	AP_endonuc_1	PANTHER	201	472
IPR020848	AP_endonuclease_F1_CS	ProSitePatterns	762	773
IPR036691	Endo/exonu/phosph_ase_sf	Gene3D	513	802
IPR036691	Endo/exonu/phosph_ase_sf	Gene3D	219	475
IPR004808	AP_endonuc_1	ProSiteProfiles	547	803
IPR003034	SAP_dom	ProSiteProfiles	87	121
IPR036361	SAP_dom_sf	Gene3D	67	129
IPR036691	Endo/exonu/phosph_ase_sf	SUPERFAMILY	251	471
IPR003034	SAP_dom	SMART	87	121
IPR020848	AP_endonuclease_F1_CS	ProSitePatterns	739	754
IPR005135	Endo/exonuclease/phosphatase	Pfam	550	794
IPR020847	AP_endonuclease_F1_BS	ProSitePatterns	281	290
IPR036361	SAP_dom_sf	SUPERFAMILY	83	119
IPR004808	AP_endonuc_1	TIGRFAM	547	801
IPR004808	AP_endonuc_1	TIGRFAM	251	471
IPR004808	AP_endonuc_1	ProSiteProfiles	251	532
IPR005135	Endo/exonuclease/phosphatase	Pfam	254	440
IPR003034	SAP_dom	Pfam	87	120
IPR036691	Endo/exonu/phosph_ase_sf	SUPERFAMILY	547	803

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.003G326500.1

Expression Profile

Co-expression Networks

Functional Annotation