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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0012495 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012495_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G334300.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G334300.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_101 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_94 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 447 | 481 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 310 | 344 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 239 | 274 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 450 | 479 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 141 | 166 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 415 | 444 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 292 | 394 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 275 | 309 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 99 | 252 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 274 | 323 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 344 | 389 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 415 | 447 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 277 | 310 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 450 | 481 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 348 | 381 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 139 | 167 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 395 | 514 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 412 | 446 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 345 | 379 |
No CAZYmes available for this sequence
| No external refs found! |