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  5. Sobic.003G336400.1

Sobic.003G336400.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010806 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010806_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G336400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G336400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_327
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt TIGRFAM 196 225
IPR002885 Pentatricopeptide_rpt TIGRFAM 406 439
IPR011990 TPR-like_helical_dom_sf Gene3D 147 246
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 194 228
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 376 529
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 298 332
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 403 437
IPR011990 TPR-like_helical_dom_sf Gene3D 469 581
IPR011990 TPR-like_helical_dom_sf Gene3D 369 468
IPR011990 TPR-like_helical_dom_sf Gene3D 247 368
IPR002885 Pentatricopeptide_rpt Pfam 375 397
IPR002885 Pentatricopeptide_rpt Pfam 268 290
IPR002885 Pentatricopeptide_rpt Pfam 545 571
IPR002885 Pentatricopeptide_rpt Pfam 193 241
IPR002885 Pentatricopeptide_rpt Pfam 403 446

No CAZYmes available for this sequence

No external refs found!