Sobic.003G337200.1

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0016675 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016675_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G337200.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G337200.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_9
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_211

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	331	365
IPR011990	TPR-like_helical_dom_sf	Gene3D	291	385
IPR002885	Pentatricopeptide_rpt	Pfam	227	254
IPR002885	Pentatricopeptide_rpt	Pfam	127	152
IPR002885	Pentatricopeptide_rpt	Pfam	92	115
IPR002885	Pentatricopeptide_rpt	Pfam	405	429
IPR032867	DYW_dom	Pfam	504	629
IPR002885	Pentatricopeptide_rpt	TIGRFAM	227	254
IPR002885	Pentatricopeptide_rpt	TIGRFAM	406	429
IPR002885	Pentatricopeptide_rpt	TIGRFAM	333	366
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	300	330
IPR045215	PPR_prot_At1g15510	PANTHER	13	633
IPR002885	Pentatricopeptide_rpt	Pfam	330	378
IPR011990	TPR-like_helical_dom_sf	Gene3D	174	290
IPR011990	TPR-like_helical_dom_sf	Gene3D	386	566
IPR011990	TPR-like_helical_dom_sf	Gene3D	21	170
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	225	255
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	449	538

No CAZYmes available for this sequence

External Links

No external refs found!