Sobic.003G338801.1

Description : expansin A1

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G338801.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G338801.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_16
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_216

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036749	Expansin_CBD_sf	SUPERFAMILY	157	249
IPR007117	Expansin_CBD	ProSiteProfiles	170	249
IPR036749	Expansin_CBD_sf	Gene3D	160	252
IPR007117	Expansin_CBD	Pfam	161	238
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	48	160
IPR007118	Expan_Lol_pI	PRINTS	47	65
IPR007118	Expan_Lol_pI	PRINTS	69	87
IPR007118	Expan_Lol_pI	PRINTS	143	159
IPR007118	Expan_Lol_pI	PRINTS	197	211
IPR007118	Expan_Lol_pI	PRINTS	29	44
IPR007118	Expan_Lol_pI	PRINTS	235	249
IPR002963	Expansin	PANTHER	6	252
IPR036908	RlpA-like_sf	Gene3D	17	155
IPR036908	RlpA-like_sf	SUPERFAMILY	12	178
IPR002963	Expansin	PRINTS	60	74
IPR002963	Expansin	PRINTS	159	171
IPR002963	Expansin	PRINTS	118	135
IPR002963	Expansin	PRINTS	235	251
IPR002963	Expansin	PRINTS	206	227
IPR002963	Expansin	PRINTS	99	109
IPR002963	Expansin	PRINTS	135	148
IPR002963	Expansin	PRINTS	171	192
IPR002963	Expansin	PRINTS	87	98
IPR007112	Expansin/allergen_DPBB_dom	SMART	65	150
IPR009009	RlpA-like_DPBB	Pfam	65	150

No CAZYmes available for this sequence

External Links

No external refs found!