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  5. Sobic.003G345300.1

Sobic.003G345300.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0013947 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013947_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G345300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G345300.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_339


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 296 330
IPR002885 Pentatricopeptide_rpt Pfam 181 235
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 119 153
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 546 580
IPR002885 Pentatricopeptide_rpt TIGRFAM 123 155
IPR002885 Pentatricopeptide_rpt TIGRFAM 549 580
IPR002885 Pentatricopeptide_rpt TIGRFAM 299 331
IPR002885 Pentatricopeptide_rpt TIGRFAM 227 261
IPR002885 Pentatricopeptide_rpt TIGRFAM 412 445
IPR002885 Pentatricopeptide_rpt TIGRFAM 377 411
IPR002885 Pentatricopeptide_rpt TIGRFAM 515 546
IPR002885 Pentatricopeptide_rpt TIGRFAM 333 361
IPR011990 TPR-like_helical_dom_sf Gene3D 119 249
IPR011990 TPR-like_helical_dom_sf Gene3D 250 368
IPR011990 TPR-like_helical_dom_sf Gene3D 369 485
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 189 223
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 409 572
IPR002885 Pentatricopeptide_rpt Pfam 295 340
IPR002885 Pentatricopeptide_rpt Pfam 123 165
IPR002885 Pentatricopeptide_rpt Pfam 374 418
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 410 444
IPR011990 TPR-like_helical_dom_sf Gene3D 486 650
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 511 545
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 224 259
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 375 409
IPR002885 Pentatricopeptide_rpt Pfam 517 542
IPR002885 Pentatricopeptide_rpt Pfam 447 473
IPR002885 Pentatricopeptide_rpt Pfam 263 288
IPR002885 Pentatricopeptide_rpt Pfam 554 578
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 445 479
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 331 361
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 154 188

No CAZYmes available for this sequence

No external refs found!