Sobic.003G348500.1

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0007119 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007119_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G348500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G348500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_79
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_23

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	ISM	GOs from InterProScan

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002022	Pec_lyase	Pfam	94	256
IPR012334	Pectin_lyas_fold	Gene3D	24	333
IPR002022	Pec_lyase	SMART	85	263
IPR045032	PEL	PANTHER	21	351
IPR018082	AmbAllergen	PRINTS	240	259
IPR018082	AmbAllergen	PRINTS	218	237
IPR018082	AmbAllergen	PRINTS	38	55
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	36	351

No CAZYmes available for this sequence

External Links

No external refs found!