Sobic.003G352700.1

Description : laccase 17

Gene families : OG_01_0000046 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000046_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G352700.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G352700.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_105

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009698	phenylpropanoid metabolic process	None	Extended
BP	GO:0009808	lignin metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	None	Extended
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0046271	phenylpropanoid catabolic process	None	Extended
BP	GO:0046274	lignin catabolic process	ISM	GOs from InterProScan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0048046	apoplast	ISM	GOs from InterProScan
MF	GO:0052716	hydroquinone:oxygen oxidoreductase activity	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR034285	CuRO_2_LCC	CDD	163	312
IPR001117	Cu-oxidase_2nd	Pfam	162	313
IPR034289	CuRO_3_LCC	CDD	425	562
IPR002355	Cu_oxidase_Cu_BS	ProSitePatterns	542	553
IPR045087	Cu-oxidase_fam	PANTHER	4	579
IPR011707	Cu-oxidase-like_N	Pfam	36	149
IPR008972	Cupredoxin	Gene3D	16	148
IPR033138	Cu_oxidase_CS	ProSitePatterns	537	557
IPR011706	Cu-oxidase_C	Pfam	443	561
IPR008972	Cupredoxin	SUPERFAMILY	26	171
IPR034288	CuRO_1_LCC	CDD	32	148
IPR008972	Cupredoxin	SUPERFAMILY	156	355
IPR017761	Laccase	TIGRFAM	29	579
IPR008972	Cupredoxin	SUPERFAMILY	364	579
IPR008972	Cupredoxin	Gene3D	160	356
IPR008972	Cupredoxin	Gene3D	384	579

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	580	8.3e-126	42	553

External Links

No external refs found!

Sobic.003G352700.1

Expression Profile

Co-expression Networks

Functional Annotation