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Description : pumilio 1
Gene families : OG_01_0009848 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009848_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G353600.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G353600.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_148 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_240 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 866 | 901 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 794 | 829 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 870 | 905 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 841 | 864 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 762 | 796 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 798 | 831 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 943 | 977 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 726 | 760 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 989 | 1016 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 908 | 940 |
| IPR033133 | PUM-HD | ProSiteProfiles | 702 | 1042 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 705 | 1039 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 758 | 793 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 903 | 938 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 939 | 974 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 975 | 1016 |
| IPR012940 | NABP | Pfam | 314 | 721 |
| IPR011989 | ARM-like | Gene3D | 702 | 1047 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 830 | 865 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 830 | 865 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 939 | 974 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 758 | 793 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 794 | 829 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 722 | 757 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 866 | 901 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 981 | 1016 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 903 | 938 |
| IPR033712 | Pumilio_RNA-bd | CDD | 717 | 1038 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 722 | 757 |
No CAZYmes available for this sequence
| No external refs found! |