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  5. Sobic.003G361800.1

Sobic.003G361800.1


Description : carboxyl-terminal domain (ctd) phosphatase-like 2


Gene families : OG_01_0005312 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005312_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G361800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G361800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_186
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_188


Type GO Term Name Evidence Source
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity ISM GOs from InterProScan
BP GO:0070940 obsolete dephosphorylation of RNA polymerase II C-terminal domain ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014720 dsRBD_dom Pfam 538 600
IPR014720 dsRBD_dom SMART 537 601
IPR014720 dsRBD_dom SMART 664 730
IPR004274 FCP1_dom Pfam 274 390
IPR004274 FCP1_dom ProSiteProfiles 162 410
IPR014720 dsRBD_dom ProSiteProfiles 656 731
IPR023214 HAD_sf Gene3D 157 418
IPR014720 dsRBD_dom ProSiteProfiles 536 602
IPR036412 HAD-like_sf SUPERFAMILY 159 414
IPR039189 Fcp1 PANTHER 30 644
IPR004274 FCP1_dom SMART 221 397

No CAZYmes available for this sequence

No external refs found!