Sobic.003G362500.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0005294 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005294_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G362500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G362500.1	No neighbors in network
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_20

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006283	transcription-coupled nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006289	nucleotide-excision repair	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	ProSiteProfiles	305	346
IPR019775	WD40_repeat_CS	ProSitePatterns	206	220
IPR001680	WD40_rpt	ProSiteProfiles	99	141
IPR042238	Rad28/ERCC8/Ckn1/ATCSA-1	PANTHER	1	450
IPR001680	WD40_rpt	ProSiteProfiles	392	423
IPR020472	G-protein_beta_WD-40_rep	PRINTS	206	220
IPR020472	G-protein_beta_WD-40_rep	PRINTS	119	133
IPR020472	G-protein_beta_WD-40_rep	PRINTS	324	338
IPR001680	WD40_rpt	SMART	92	132
IPR001680	WD40_rpt	SMART	179	219
IPR001680	WD40_rpt	SMART	34	73
IPR001680	WD40_rpt	SMART	385	424
IPR001680	WD40_rpt	SMART	298	337
IPR001680	WD40_rpt	ProSiteProfiles	186	228
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	274	427
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	3	270
IPR019775	WD40_repeat_CS	ProSitePatterns	324	338
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	41	431
IPR001680	WD40_rpt	Pfam	387	423
IPR001680	WD40_rpt	Pfam	182	219
IPR001680	WD40_rpt	Pfam	306	337

No CAZYmes available for this sequence

External Links

No external refs found!