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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0013637 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013637_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G374500.5 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G374500.5 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_148 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 433 | 467 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 313 | 371 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 396 | 495 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 84 | 262 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 263 | 395 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 401 | 427 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 224 | 254 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 155 | 176 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 222 | 256 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 431 | 460 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 365 | 396 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 401 | 433 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 436 | 468 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 154 | 176 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 334 | 362 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 398 | 432 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 326 | 361 |
No CAZYmes available for this sequence
| No external refs found! |