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  5. Sobic.003G388900.1

Sobic.003G388900.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0013842 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013842_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G388900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G388900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_211
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_95


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 400 434
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 435 469
IPR002885 Pentatricopeptide_rpt Pfam 403 429
IPR002885 Pentatricopeptide_rpt Pfam 363 388
IPR011990 TPR-like_helical_dom_sf Gene3D 128 284
IPR011990 TPR-like_helical_dom_sf Gene3D 317 452
IPR011990 TPR-like_helical_dom_sf Gene3D 453 602
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 540 575
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 505 539
IPR002885 Pentatricopeptide_rpt Pfam 505 552
IPR002885 Pentatricopeptide_rpt Pfam 437 482
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 368 533
IPR002885 Pentatricopeptide_rpt TIGRFAM 438 471
IPR002885 Pentatricopeptide_rpt TIGRFAM 507 541
IPR002885 Pentatricopeptide_rpt TIGRFAM 472 498
IPR002885 Pentatricopeptide_rpt TIGRFAM 403 431
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 470 504

No CAZYmes available for this sequence

No external refs found!