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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0015620 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015620_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G399100.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G399100.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_101 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 314 | 348 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 516 | 556 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 245 | 365 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 366 | 472 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 316 | 349 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 519 | 552 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 112 | 145 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 89 | 237 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 473 | 698 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 213 | 238 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 417 | 444 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 112 | 142 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 185 | 205 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 389 | 414 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 44 | 88 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 415 | 449 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 110 | 144 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 517 | 551 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 15 | 76 |
No CAZYmes available for this sequence
| No external refs found! |