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  5. Sobic.003G411400.2

Sobic.003G411400.2


Description : SU(VAR)3-9 homolog 4


Gene families : OG_01_0004717 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004717_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G411400.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G411400.2
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_120
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_236


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
BP GO:0016571 histone methylation ISM GOs from InterProScan
MF GO:0018024 obsolete histone lysine N-methyltransferase activity ISM GOs from InterProScan
BP GO:0034968 histone lysine methylation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036987 SRA-YDG_sf Gene3D 200 396
IPR025794 H3-K9-MeTrfase_plant ProSiteProfiles 30 694
IPR001214 SET_dom Pfam 528 664
IPR007728 Pre-SET_dom ProSiteProfiles 451 514
IPR007728 Pre-SET_dom Pfam 407 509
IPR003105 SRA_YDG ProSiteProfiles 218 373
IPR003105 SRA_YDG SMART 213 377
IPR001214 SET_dom ProSiteProfiles 517 664
IPR003616 Post-SET_dom SMART 678 694
IPR001214 SET_dom SMART 517 670
IPR007728 Pre-SET_dom SMART 404 501
IPR015947 PUA-like_sf SUPERFAMILY 200 393
IPR003105 SRA_YDG Pfam 217 377
IPR003616 Post-SET_dom ProSiteProfiles 678 694

No CAZYmes available for this sequence

No external refs found!