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Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Gene families : OG_01_0011677 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011677_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G428100.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G428100.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_142 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_236 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0046872 | metal ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 211 | 265 |
| IPR011011 | Znf_FYVE_PHD | SUPERFAMILY | 486 | 554 |
| IPR009091 | RCC1/BLIP-II | Gene3D | 44 | 220 |
| IPR009091 | RCC1/BLIP-II | SUPERFAMILY | 96 | 487 |
| IPR013083 | Znf_RING/FYVE/PHD | Gene3D | 488 | 563 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 266 | 317 |
| IPR000408 | Reg_chr_condens | ProSitePatterns | 304 | 314 |
| IPR017455 | Znf_FYVE-rel | ProSiteProfiles | 490 | 552 |
| IPR000408 | Reg_chr_condens | ProSitePatterns | 252 | 262 |
| IPR009091 | RCC1/BLIP-II | Gene3D | 221 | 487 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 330 | 381 |
| IPR000306 | Znf_FYVE | Pfam | 486 | 552 |
| IPR000408 | Reg_chr_condens | Pfam | 210 | 261 |
| IPR000408 | Reg_chr_condens | Pfam | 329 | 378 |
| IPR000408 | Reg_chr_condens | Pfam | 159 | 207 |
| IPR000408 | Reg_chr_condens | Pfam | 381 | 430 |
| IPR000408 | Reg_chr_condens | Pfam | 435 | 482 |
| IPR000408 | Reg_chr_condens | Pfam | 266 | 314 |
| IPR027988 | BRX_N | Pfam | 742 | 776 |
| IPR000408 | Reg_chr_condens | PRINTS | 268 | 282 |
| IPR000408 | Reg_chr_condens | PRINTS | 142 | 155 |
| IPR000408 | Reg_chr_condens | PRINTS | 211 | 227 |
| IPR000408 | Reg_chr_condens | PRINTS | 371 | 389 |
| IPR000408 | Reg_chr_condens | PRINTS | 429 | 450 |
| IPR000408 | Reg_chr_condens | PRINTS | 252 | 268 |
| IPR000408 | Reg_chr_condens | PRINTS | 161 | 177 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 97 | 158 |
| IPR013591 | Brevis_radix_dom | ProSiteProfiles | 849 | 904 |
| IPR013591 | Brevis_radix_dom | Pfam | 849 | 903 |
| IPR000408 | Reg_chr_condens | ProSitePatterns | 145 | 155 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 434 | 485 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 159 | 210 |
| IPR000306 | Znf_FYVE | SMART | 484 | 553 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 382 | 433 |
No CAZYmes available for this sequence
| No external refs found! |