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  5. Sobic.003G430600.1

Sobic.003G430600.1


Description : Calcium-binding EF-hand family protein


Gene families : OG_01_0012208 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012208_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G430600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G430600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_69
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_57


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011992 EF-hand-dom_pair SUPERFAMILY 8 152
IPR002048 EF_hand_dom ProSiteProfiles 4 39
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 136 148
IPR002048 EF_hand_dom ProSiteProfiles 41 76
IPR002048 EF_hand_dom ProSiteProfiles 123 154
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 54 66
IPR002048 EF_hand_dom SMART 45 73
IPR002048 EF_hand_dom SMART 91 119
IPR002048 EF_hand_dom SMART 8 36
IPR002048 EF_hand_dom SMART 127 154
IPR002048 EF_hand_dom Pfam 11 69
IPR002048 EF_hand_dom Pfam 104 153
IPR002048 EF_hand_dom CDD 96 152
IPR002048 EF_hand_dom CDD 8 59
IPR002048 EF_hand_dom ProSiteProfiles 87 122
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 17 29

No CAZYmes available for this sequence

No external refs found!