- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0000807 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000807_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G434800.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G434800.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_146 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 64 | 204 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 409 | 525 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 635 | 743 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 428 | 462 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 205 | 308 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 526 | 634 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 498 | 532 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 323 | 357 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 535 | 565 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 465 | 492 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 502 | 530 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 533 | 563 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 534 | 717 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 395 | 428 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 362 | 394 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 570 | 603 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 535 | 565 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 325 | 358 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 431 | 460 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 691 | 723 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 257 | 289 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 501 | 532 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 656 | 689 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 221 | 243 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 688 | 722 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 358 | 392 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 653 | 687 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 393 | 427 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 567 | 601 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 309 | 408 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 253 | 287 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 220 | 266 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 357 | 404 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 567 | 613 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 652 | 701 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 319 | 350 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 424 | 453 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 218 | 252 |
No CAZYmes available for this sequence
| No external refs found! |