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  5. Sobic.004G028700.1

Sobic.004G028700.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0014717 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014717_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G028700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G028700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_174
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_105


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000743 Glyco_hydro_28 Pfam 138 461
IPR000743 Glyco_hydro_28 ProSitePatterns 316 329
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 98 484
IPR012334 Pectin_lyas_fold Gene3D 93 502
IPR006626 PbH1 SMART 368 389
IPR006626 PbH1 SMART 309 329
IPR006626 PbH1 SMART 339 360
IPR006626 PbH1 SMART 236 285
IPR006626 PbH1 SMART 286 307
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 521 1.4e-90 129 465
No external refs found!