Sobic.004G035300.1

Description : DNA helicase (RECQl4A)

Gene families : OG_01_0010895 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010895_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G035300.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G035300.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_257
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_187

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006310	DNA recombination	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	ISM	GOs from InterProScan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR010997	HRDC-like_sf	SUPERFAMILY	995	1072
IPR027417	P-loop_NTPase	Gene3D	405	630
IPR036388	WH-like_DNA-bd_sf	Gene3D	849	959
IPR044876	HRDC_dom_sf	Gene3D	987	1076
IPR001650	Helicase_C	ProSiteProfiles	645	804
IPR002121	HRDC_dom	Pfam	998	1064
IPR014001	Helicase_ATP-bd	ProSiteProfiles	450	623
IPR001763	Rhodanese-like_dom	ProSiteProfiles	663	698
IPR014001	Helicase_ATP-bd	SMART	438	639
IPR002121	HRDC_dom	SMART	992	1074
IPR018982	RQC_domain	SMART	851	962
IPR027417	P-loop_NTPase	SUPERFAMILY	483	774
IPR002464	DNA/RNA_helicase_DEAH_CS	ProSitePatterns	562	571
IPR001650	Helicase_C	Pfam	652	753
IPR032284	RecQ_Zn-bd	Pfam	765	842
IPR018982	RQC_domain	Pfam	849	962
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	444	610
IPR001650	Helicase_C	SMART	673	754
IPR027417	P-loop_NTPase	Gene3D	631	845
IPR004589	DNA_helicase_ATP-dep_RecQ	TIGRFAM	434	902
IPR002121	HRDC_dom	ProSiteProfiles	992	1074
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	849	960

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G035300.1

Expression Profile

Co-expression Networks

Functional Annotation