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  5. Sobic.004G051600.1

Sobic.004G051600.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0019186 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019186_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G051600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G051600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_48
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_220


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 285 319
IPR002885 Pentatricopeptide_rpt Pfam 360 383
IPR002885 Pentatricopeptide_rpt Pfam 91 114
IPR002885 Pentatricopeptide_rpt Pfam 156 181
IPR002885 Pentatricopeptide_rpt Pfam 184 211
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 320 354
IPR011990 TPR-like_helical_dom_sf Gene3D 319 464
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 182 212
IPR002885 Pentatricopeptide_rpt TIGRFAM 154 183
IPR002885 Pentatricopeptide_rpt TIGRFAM 259 286
IPR002885 Pentatricopeptide_rpt TIGRFAM 184 211
IPR002885 Pentatricopeptide_rpt TIGRFAM 287 321
IPR002885 Pentatricopeptide_rpt Pfam 284 332
IPR011990 TPR-like_helical_dom_sf Gene3D 89 254

No CAZYmes available for this sequence

No external refs found!