Sobic.004G057400.1

Description : copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)

Gene families : OG_01_0001241 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001241_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G057400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G057400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_322
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	ISM	GOs from InterProScan
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR023299	ATPase_P-typ_cyto_dom_N	Gene3D	661	804
IPR008250	ATPase_P-typ_transduc_dom_A_sf	SUPERFAMILY	449	536
IPR017969	Heavy-metal-associated_CS	ProSitePatterns	51	80
IPR001757	P_typ_ATPase	PRINTS	871	887
IPR001757	P_typ_ATPase	PRINTS	843	859
IPR001757	P_typ_ATPase	PRINTS	902	927
IPR001757	P_typ_ATPase	TIGRFAM	402	671
IPR001757	P_typ_ATPase	TIGRFAM	732	950
IPR018303	ATPase_P-typ_P_site	ProSitePatterns	652	658
IPR036163	HMA_dom_sf	SUPERFAMILY	199	260
IPR017969	Heavy-metal-associated_CS	ProSitePatterns	133	162
IPR036163	HMA_dom_sf	SUPERFAMILY	42	114
IPR023298	ATPase_P-typ_TM_dom_sf	SUPERFAMILY	383	959
IPR036412	HAD-like_sf	SUPERFAMILY	649	977
IPR023214	HAD_sf	Gene3D	641	921
IPR006121	HMA_dom	ProSiteProfiles	128	194
IPR006121	HMA_dom	CDD	48	111
IPR044492	P_typ_ATPase_HD_dom	SFLD	631	923
IPR006121	HMA_dom	ProSiteProfiles	202	260
IPR006122	HMA_Cu_ion-bd	TIGRFAM	47	110
IPR006122	HMA_Cu_ion-bd	TIGRFAM	130	192
IPR027256	P-typ_ATPase_IB	TIGRFAM	364	980
IPR006121	HMA_dom	ProSiteProfiles	46	112
IPR006121	HMA_dom	Pfam	49	109
IPR006121	HMA_dom	Pfam	131	191
IPR006121	HMA_dom	CDD	130	193
IPR036163	HMA_dom_sf	SUPERFAMILY	128	198

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G057400.1

Expression Profile

Co-expression Networks

Functional Annotation