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  5. Sobic.004G078100.1

Sobic.004G078100.1


Description : KH domain-containing protein / zinc finger (CCCH type) family protein


Gene families : OG_01_0000640 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000640_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G078100.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G078100.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_149
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003729 mRNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036612 KH_dom_type_1_sf Gene3D 162 257
IPR000571 Znf_CCCH SMART 260 286
IPR000571 Znf_CCCH SMART 34 61
IPR000571 Znf_CCCH SMART 94 121
IPR036612 KH_dom_type_1_sf SUPERFAMILY 157 235
IPR004088 KH_dom_type_1 Pfam 167 231
IPR036855 Znf_CCCH_sf SUPERFAMILY 35 60
IPR000571 Znf_CCCH ProSiteProfiles 34 62
IPR004087 KH_dom SMART 164 234
IPR045877 ZFP36-like PANTHER 2 293
IPR000571 Znf_CCCH Pfam 261 285
IPR000571 Znf_CCCH Pfam 96 121
IPR036855 Znf_CCCH_sf SUPERFAMILY 93 125
IPR036855 Znf_CCCH_sf SUPERFAMILY 259 291
IPR000571 Znf_CCCH ProSiteProfiles 260 287
IPR000571 Znf_CCCH ProSiteProfiles 94 122

No CAZYmes available for this sequence

No external refs found!