Sobic.004G078400.1

Description : Leucine-rich repeat transmembrane protein kinase

Gene families : OG_01_0002894 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002894_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G078400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G078400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_51

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006468	protein phosphorylation	ISM	GOs from InterProScan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	249	273
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	129	153
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	745	768
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	201	225
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	488	512
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	644	668
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	669	693
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	536	560
IPR003591	Leu-rich_rpt_typical-subtyp	SMART	57	80
IPR008271	Ser/Thr_kinase_AS	ProSitePatterns	1046	1058
IPR032675	LRR_dom_sf	Gene3D	416	563
IPR032675	LRR_dom_sf	Gene3D	573	816
IPR032675	LRR_dom_sf	Gene3D	155	415
IPR001611	Leu-rich_rpt	Pfam	35	94
IPR001611	Leu-rich_rpt	Pfam	490	549
IPR001611	Leu-rich_rpt	Pfam	419	475
IPR001611	Leu-rich_rpt	Pfam	107	166
IPR032675	LRR_dom_sf	Gene3D	83	154
IPR032675	LRR_dom_sf	Gene3D	1	82
IPR000719	Prot_kinase_dom	SMART	923	1199
IPR017441	Protein_kinase_ATP_BS	ProSitePatterns	929	951
IPR001611	Leu-rich_rpt	Pfam	227	249
IPR001611	Leu-rich_rpt	ProSiteProfiles	59	80
IPR000719	Prot_kinase_dom	ProSiteProfiles	923	1199
IPR001245	Ser-Thr/Tyr_kinase_cat_dom	Pfam	927	1194
IPR011009	Kinase-like_dom_sf	SUPERFAMILY	903	1196

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G078400.1

Expression Profile

Co-expression Networks

Functional Annotation