Sobic.004G106700.1

Description : peroxin 7

Gene families : OG_01_0019275 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019275_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G106700.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G106700.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_95
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_95

Type	GO Term	Name	Evidence	Source
MF	GO:0000268	peroxisome targeting sequence binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005048	signal sequence binding	None	Extended
MF	GO:0005053	peroxisome matrix targeting signal-2 binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007031	peroxisome organization	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015919	peroxisomal membrane transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016558	protein import into peroxisome matrix	ISM	GOs from InterProScan
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0033218	amide binding	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0042277	peptide binding	None	Extended
BP	GO:0043574	peroxisomal transport	None	Extended
BP	GO:0044743	protein transmembrane import into intracellular organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0065002	intracellular protein transmembrane transport	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071806	protein transmembrane transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072662	protein localization to peroxisome	None	Extended
BP	GO:0072663	establishment of protein localization to peroxisome	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR044536	PEX7	PANTHER	1	320
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	13	312
IPR001680	WD40_rpt	SMART	185	225
IPR001680	WD40_rpt	SMART	142	182
IPR001680	WD40_rpt	SMART	54	93
IPR001680	WD40_rpt	SMART	99	139
IPR001680	WD40_rpt	SMART	273	313
IPR001680	WD40_rpt	SMART	229	269
IPR001680	WD40_rpt	ProSiteProfiles	192	234
IPR001680	WD40_rpt	Pfam	101	139
IPR001680	WD40_rpt	Pfam	146	182
IPR001680	WD40_rpt	Pfam	232	269
IPR001680	WD40_rpt	Pfam	189	225
IPR001680	WD40_rpt	ProSiteProfiles	106	148
IPR001680	WD40_rpt	ProSiteProfiles	149	191
IPR019775	WD40_repeat_CS	ProSitePatterns	212	226
IPR001680	WD40_rpt	ProSiteProfiles	236	278
IPR020472	G-protein_beta_WD-40_rep	PRINTS	169	183
IPR020472	G-protein_beta_WD-40_rep	PRINTS	212	226
IPR020472	G-protein_beta_WD-40_rep	PRINTS	126	140
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	5	313

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G106700.1

Expression Profile

Co-expression Networks

Functional Annotation