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  5. Sobic.004G113300.1

Sobic.004G113300.1


Description : cyclic nucleotide gated channel 1


Gene families : OG_01_0003210 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003210_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G113300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G113300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_201
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_118


Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity ISM GOs from InterProScan
BP GO:0006811 monoatomic ion transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014710 RmlC-like_jellyroll Gene3D 407 527
IPR000595 cNMP-bd_dom ProSiteProfiles 409 493
IPR005821 Ion_trans_dom Pfam 19 333
IPR000595 cNMP-bd_dom SMART 409 540
IPR018490 cNMP-bd_dom_sf SUPERFAMILY 339 531
IPR000595 cNMP-bd_dom CDD 409 540
IPR000595 cNMP-bd_dom Pfam 430 516

No CAZYmes available for this sequence

No external refs found!