Sobic.004G121800.1

Description : expansin 11

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G121800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G121800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_10
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_34

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007117	Expansin_CBD	ProSiteProfiles	174	254
IPR009009	RlpA-like_DPBB	Pfam	67	154
IPR036749	Expansin_CBD_sf	Gene3D	164	259
IPR007117	Expansin_CBD	Pfam	165	243
IPR036908	RlpA-like_sf	SUPERFAMILY	31	182
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	50	164
IPR036749	Expansin_CBD_sf	SUPERFAMILY	161	254
IPR036908	RlpA-like_sf	Gene3D	18	159
IPR002963	Expansin	PRINTS	92	103
IPR002963	Expansin	PRINTS	240	256
IPR002963	Expansin	PRINTS	122	139
IPR002963	Expansin	PRINTS	139	152
IPR002963	Expansin	PRINTS	211	232
IPR002963	Expansin	PRINTS	62	76
IPR002963	Expansin	PRINTS	105	115
IPR002963	Expansin	PRINTS	163	175
IPR002963	Expansin	PRINTS	175	196
IPR007118	Expan_Lol_pI	PRINTS	31	46
IPR007118	Expan_Lol_pI	PRINTS	49	67
IPR007118	Expan_Lol_pI	PRINTS	71	89
IPR007118	Expan_Lol_pI	PRINTS	202	216
IPR007118	Expan_Lol_pI	PRINTS	147	163
IPR007118	Expan_Lol_pI	PRINTS	240	254
IPR002963	Expansin	PANTHER	4	259
IPR007112	Expansin/allergen_DPBB_dom	SMART	67	154

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
CBM63	78	260	0.00025	174	237

External Links

No external refs found!