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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0017946 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017946_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G142700.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G142700.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_43 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 558 | 653 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 454 | 557 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 610 | 644 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 330 | 436 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 170 | 200 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 406 | 440 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 275 | 300 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 105 | 126 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 338 | 385 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 405 | 454 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 507 | 556 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 170 | 215 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 577 | 623 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 76 | 386 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 441 | 475 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 266 | 329 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 339 | 373 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 167 | 265 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 71 | 166 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 240 | 270 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 274 | 301 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 479 | 505 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 443 | 477 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 581 | 607 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 510 | 544 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 545 | 579 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 205 | 237 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 408 | 441 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 612 | 646 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 306 | 340 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 172 | 197 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 341 | 374 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 543 | 577 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 272 | 302 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 304 | 338 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 237 | 271 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 476 | 506 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 301 | 324 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 472 | 503 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 233 | 265 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 508 | 542 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 202 | 236 |
No CAZYmes available for this sequence
| No external refs found! |