1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G143100.2

Sobic.004G143100.2


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0006340 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006340_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G143100.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G143100.2
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_305
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_397


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 246 280
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 338 372
IPR002885 Pentatricopeptide_rpt Pfam 113 142
IPR002885 Pentatricopeptide_rpt Pfam 179 206
IPR002885 Pentatricopeptide_rpt Pfam 302 333
IPR002885 Pentatricopeptide_rpt Pfam 145 170
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 211 245
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 306 336
IPR002885 Pentatricopeptide_rpt Pfam 337 378
IPR002885 Pentatricopeptide_rpt Pfam 210 259
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 179 209
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 145 175
IPR011990 TPR-like_helical_dom_sf Gene3D 194 287
IPR011990 TPR-like_helical_dom_sf Gene3D 70 193
IPR011990 TPR-like_helical_dom_sf Gene3D 288 386
IPR002885 Pentatricopeptide_rpt TIGRFAM 308 334
IPR002885 Pentatricopeptide_rpt TIGRFAM 340 374
IPR002885 Pentatricopeptide_rpt TIGRFAM 181 206
IPR002885 Pentatricopeptide_rpt TIGRFAM 213 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 248 282

No CAZYmes available for this sequence

No external refs found!