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  5. Sobic.004G156100.2

Sobic.004G156100.2


Description : root hair specific 18


Gene families : OG_01_0032816 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0032816_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G156100.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G156100.2
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_136


Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity ISM GOs from InterProScan
BP GO:0006979 response to oxidative stress ISM GOs from InterProScan
MF GO:0020037 heme binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR010255 Haem_peroxidase_sf SUPERFAMILY 9 301
IPR002016 Haem_peroxidase Pfam 40 299
IPR019793 Peroxidases_heam-ligand_BS ProSitePatterns 187 197
IPR000823 Peroxidase_pln PANTHER 10 314
IPR002016 Haem_peroxidase PRINTS 134 146
IPR002016 Haem_peroxidase PRINTS 187 202
IPR002016 Haem_peroxidase PRINTS 114 131
IPR002016 Haem_peroxidase PRINTS 55 69
IPR000823 Peroxidase_pln PRINTS 113 123
IPR000823 Peroxidase_pln PRINTS 57 77
IPR000823 Peroxidase_pln PRINTS 186 198
IPR000823 Peroxidase_pln PRINTS 281 298
IPR019794 Peroxidases_AS ProSitePatterns 55 66
IPR002016 Haem_peroxidase ProSiteProfiles 35 326
HMM Family HMM Length Query Length e-Value Query Start Query End
AA2 255 327 8.8e-39 35 230
No external refs found!