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  5. Sobic.004G171200.1

Sobic.004G171200.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0004664 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004664_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G171200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G171200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_301
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_193


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 61 102
IPR001680 WD40_rpt SMART 12 51
IPR001680 WD40_rpt SMART 96 135
IPR001680 WD40_rpt SMART 54 93
IPR001680 WD40_rpt SMART 220 261
IPR001680 WD40_rpt SMART 264 303
IPR001680 WD40_rpt SMART 181 217
IPR001680 WD40_rpt SMART 140 177
IPR001680 WD40_rpt ProSiteProfiles 271 303
IPR001680 WD40_rpt ProSiteProfiles 103 135
IPR001680 WD40_rpt ProSiteProfiles 19 60
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 5 303
IPR001680 WD40_rpt Pfam 189 215
IPR001680 WD40_rpt Pfam 270 302
IPR001680 WD40_rpt Pfam 221 260
IPR001680 WD40_rpt Pfam 17 51
IPR001680 WD40_rpt Pfam 57 93
IPR001680 WD40_rpt Pfam 98 134
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 11 302

No CAZYmes available for this sequence

No external refs found!