Sobic.004G193800.1

Description : magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases

Gene families : OG_01_0002226 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002226_tree

Sequence : cds (download), rna (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G193800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G193800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_52

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	amino acid catabolic process	ISM	GOs from InterProScan
BP	GO:0009233	menaquinone metabolic process	None	Extended
BP	GO:0009234	menaquinone biosynthetic process	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016744	transketolase or transaldolase activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030976	thiamine pyrophosphate binding	ISM	GOs from InterProScan
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042180	cellular ketone metabolic process	None	Extended
BP	GO:0042181	ketone biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
MF	GO:0050997	quaternary ammonium group binding	None	Extended
MF	GO:0070204	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity	ISM	GOs from InterProScan
MF	GO:0070205	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901661	quinone metabolic process	None	Extended
BP	GO:1901663	quinone biosynthetic process	None	Extended
MF	GO:1901681	sulfur compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029061	THDP-binding	SUPERFAMILY	782	931
IPR029065	Enolase_C-like	Pfam	1160	1327
IPR029058	AB_hydrolase	SUPERFAMILY	1424	1699
IPR013342	Mandelate_racemase_C	SMART	1154	1249
IPR022485	SHCHC_synthase_MenH	Hamap	1430	1700
IPR036849	Enolase-like_C_sf	Gene3D	1131	1373
IPR004433	MenaQ_synth_MenD	TIGRFAM	360	832
IPR004433	MenaQ_synth_MenD	PANTHER	158	1701
IPR012001	Thiamin_PyroP_enz_TPP-bd_dom	Pfam	361	521
IPR011766	TPP_enzyme_TPP-bd	Pfam	822	942
IPR036849	Enolase-like_C_sf	SUPERFAMILY	1151	1367
IPR018110	Mandel_Rmase/mucon_lact_enz_CS	ProSitePatterns	1201	1232
IPR029035	DHS-like_NAD/FAD-binding_dom	SUPERFAMILY	571	730
IPR004433	MenaQ_synth_MenD	Hamap	354	961
IPR029017	Enolase-like_N	Gene3D	989	1119
IPR029061	THDP-binding	SUPERFAMILY	351	529
IPR029058	AB_hydrolase	Gene3D	1423	1700
IPR000073	AB_hydrolase_1	Pfam	1436	1692
IPR029017	Enolase-like_N	SUPERFAMILY	1003	1107
IPR032264	MenD_middle	Pfam	539	772

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
CE1	227	1704	1.7e-09	1430	1587

External Links

No external refs found!

Sobic.004G193800.1

Expression Profile

Co-expression Networks

Functional Annotation