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  5. Sobic.004G212100.1

Sobic.004G212100.1


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0011983 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011983_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G212100.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G212100.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR033443 PPR_long Pfam 396 516
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 377 411
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 449 483
IPR002885 Pentatricopeptide_rpt Pfam 631 656
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 342 376
IPR002885 Pentatricopeptide_rpt Pfam 336 388
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 412 446
IPR011990 TPR-like_helical_dom_sf Gene3D 297 427
IPR002885 Pentatricopeptide_rpt TIGRFAM 346 378
IPR002885 Pentatricopeptide_rpt TIGRFAM 631 660
IPR002885 Pentatricopeptide_rpt TIGRFAM 384 412
IPR002885 Pentatricopeptide_rpt TIGRFAM 416 441
IPR011990 TPR-like_helical_dom_sf Gene3D 530 671
IPR011990 TPR-like_helical_dom_sf Gene3D 442 514

No CAZYmes available for this sequence

No external refs found!