1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G220101.1

Sobic.004G220101.1


Description : zinc knuckle (CCHC-type) family protein


Gene families : OG_01_0000251 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000251_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G220101.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G220101.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_31
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_394


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001878 Znf_CCHC ProSiteProfiles 383 398
IPR001878 Znf_CCHC ProSiteProfiles 491 506
IPR001878 Znf_CCHC ProSiteProfiles 539 553
IPR036875 Znf_CCHC_sf SUPERFAMILY 519 555
IPR036875 Znf_CCHC_sf SUPERFAMILY 375 433
IPR001878 Znf_CCHC Pfam 538 553
IPR001878 Znf_CCHC Pfam 490 506
IPR001878 Znf_CCHC SMART 415 431
IPR001878 Znf_CCHC SMART 491 507
IPR001878 Znf_CCHC SMART 538 554
IPR001878 Znf_CCHC SMART 382 398
IPR036875 Znf_CCHC_sf SUPERFAMILY 473 514

No CAZYmes available for this sequence

No external refs found!