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  5. Sobic.004G227900.1

Sobic.004G227900.1


Description : expansin B3


Gene families : OG_01_0011984 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011984_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G227900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G227900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_15


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007117 Expansin_CBD Pfam 176 257
IPR036749 Expansin_CBD_sf Gene3D 171 273
IPR036908 RlpA-like_sf SUPERFAMILY 41 173
IPR036908 RlpA-like_sf Gene3D 32 170
IPR007112 Expansin/allergen_DPBB_dom SMART 82 164
IPR007117 Expansin_CBD ProSiteProfiles 187 268
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 64 174
IPR036749 Expansin_CBD_sf SUPERFAMILY 174 268
IPR009009 RlpA-like_DPBB Pfam 84 161
IPR007118 Expan_Lol_pI PRINTS 63 81
IPR007118 Expan_Lol_pI PRINTS 157 173
IPR007118 Expan_Lol_pI PRINTS 215 229
IPR007118 Expan_Lol_pI PRINTS 86 104
IPR007118 Expan_Lol_pI PRINTS 254 268
IPR007118 Expan_Lol_pI PRINTS 45 60
IPR005795 LolPI PRINTS 146 161
IPR005795 LolPI PRINTS 194 209
IPR005795 LolPI PRINTS 223 240
IPR005795 LolPI PRINTS 178 193
IPR005795 LolPI PRINTS 124 139
IPR005795 LolPI PRINTS 84 95

No CAZYmes available for this sequence

No external refs found!