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  5. Sobic.004G233700.1

Sobic.004G233700.1


Description : Glycosyl hydrolase family protein


Gene families : OG_01_0000165 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000165_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G233700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G233700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_86


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0009044 xylan 1,4-beta-xylosidase activity ISM GOs from InterProScan
BP GO:0045493 xylan catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002772 Glyco_hydro_3_C Pfam 411 640
IPR026891 Fn3-like Pfam 707 776
IPR026891 Fn3-like SMART 705 777
IPR036881 Glyco_hydro_3_C_sf Gene3D 396 641
IPR013783 Ig-like_fold Gene3D 676 782
IPR001764 Glyco_hydro_3_N PRINTS 217 233
IPR001764 Glyco_hydro_3_N PRINTS 291 309
IPR001764 Glyco_hydro_3_N PRINTS 123 142
IPR044993 BXL PANTHER 16 783
IPR036881 Glyco_hydro_3_C_sf SUPERFAMILY 411 643
IPR001764 Glyco_hydro_3_N Pfam 117 368
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 50 409
IPR036962 Glyco_hydro_3_N_sf Gene3D 62 386
HMM Family HMM Length Query Length e-Value Query Start Query End
GH3 216 785 2.5e-71 85 338
No external refs found!